Uploading files in a webapp can be extremely tricky and sometimes the quickest way to do it is to store the file directly in the webserver or into a DNS (like Amazon S3) and then to save the link and the metadata inside a table in the DB. The thing is that you'll have to deal with file permissions, server storage, file management and so on (which is perfectly fine, by the way).
You have different collections in MongoDb with de-normalized attributes. As you may know, due to its not-join nature, MongoDb tends to encourage repetition of the same value in different collections (de-normalization). In this MongoDb is opposed to a more SQL-like approach where you usually reference only the ID of the value with a foreign key.