The Portable PHP password hashing framework allows advanced password hashing offering increased security over simple MD5- or SHA1-hashed passwords. phpass is already in use in some larger projects such as WordPress (since v2.5), Drupal 7 and phpBB 3.
This article is called extended guide is because there is already a security guide in the Yii tutorial security section. but that guide is not complete in the sense that it does not rise the developers' attention to some other commonly happening attacks: SQL injection and magic URL, which can be major vulnerabilities in your application without much caring.
Yii's by-default directory organization works well enough, but there are several steps one can take that improve the security and serviceability of the system, especially in the context of multiple Yii projects on the same machine (including multiple versions of the same project).