You have different collections in MongoDb with de-normalized attributes. As you may know, due to its not-join nature, MongoDb tends to encourage repetition of the same value in different collections (de-normalization). In this MongoDb is opposed to a more SQL-like approach where you usually reference only the ID of the value with a foreign key.
Uploading files in a webapp can be extremely tricky and sometimes the quickest way to do it is to store the file directly in the webserver or into a DNS (like Amazon S3) and then to save the link and the metadata inside a table in the DB. The thing is that you'll have to deal with file permissions, server storage, file management and so on (which is perfectly fine, by the way).